20714

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 4656258..4656621 Replicon chromosome
Accession NC_003902
Organism Xanthomonas campestris pv. campestris str. ATCC 33913

Toxin (Protein)


Gene name EcnB Uniprot ID G0CKD4
Locus tag XCC_RS20340 Protein ID WP_011270059.1
Coordinates 4656258..4656392 (-) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID Q8P3Z2
Locus tag XCC_RS20345 Protein ID WP_011038999.1
Coordinates 4656469..4656621 (-) Length 51 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XCC_RS20320 4651522..4653174 - 1653 WP_043877841.1 M28 family peptidase -
XCC_RS20325 4653339..4654283 - 945 WP_043877842.1 MBL fold metallo-hydrolase -
XCC_RS20330 4654367..4655656 - 1290 WP_029629069.1 tryptophan--tRNA ligase -
XCC_RS20335 4655816..4656025 - 210 WP_011038998.1 CsbD family protein -
XCC_RS20340 4656258..4656392 - 135 WP_011270059.1 entericidin A/B family lipoprotein Toxin
XCC_RS20345 4656469..4656621 - 153 WP_011038999.1 entericidin A/B family lipoprotein Antitoxin
XCC_RS20350 4656732..4657655 - 924 WP_011039000.1 arginase -
XCC_RS20355 4657969..4658430 + 462 WP_011039001.1 roadblock/LC7 domain-containing protein -
XCC_RS20360 4658513..4658872 + 360 WP_011039002.1 hypothetical protein -
XCC_RS20365 4658975..4659892 + 918 WP_011039003.1 hypothetical protein -
XCC_RS20370 4659889..4660431 + 543 WP_011039004.1 GTPase -
XCC_RS20375 4660766..4661449 + 684 WP_011039005.1 dTMP kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4431.27 Da        Isoelectric Point: 9.3487

>T20714 WP_011270059.1 NC_003902:c4656392-4656258 [Xanthomonas campestris pv. campestris str. ATCC 33913]
MKRAIALLVLSMLSVGMLAGCNTVAGAGKDVQGAGEKVEDAARK

Download         Length: 135 bp

>T20714 NC_003902:c4656392-4656258 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGAAGCGTGCAATTGCATTGTTGGTGCTGTCGATGTTGTCGGTTGGAATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCTGGCGAGAAGGTGGAAGACGCCGCGCGCAAGTGA

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5173.15 Da        Isoelectric Point: 8.2782

>AT20714 WP_011038999.1 NC_003902:c4656621-4656469 [Xanthomonas campestris pv. campestris str. ATCC 33913]
MKRLLTLMVLGLFSAGMMTGCNTMAGAGKDMQGAGDKVEKTADKCSDGKC

Download         Length: 153 bp

>AT20714 NC_003902:c4656621-4656469 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTCTCGGCCGGCATGATGACTGGCTGTAACACCATGGCTGGTGC
CGGAAAGGACATGCAGGGTGCGGGTGACAAGGTCGAGAAGACCGCCGACAAATGCAGCGACGGTAAGTGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H2XDQ0

Antitoxin

Source ID Structure
AlphaFold DB Q8P3Z2

References