Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2599841..2599984 | Replicon | chromosome |
| Accession | NZ_CP077405 | ||
| Organism | Citrobacter braakii strain FDAARGOS 1421 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2599846..2599949 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2599841..2599984 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L51_RS12790 (I6L51_12790) | 2595504..2596892 | + | 1389 | WP_046276432.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L51_RS12795 (I6L51_12795) | 2596993..2597229 | + | 237 | WP_169922378.1 | DUF1480 family protein | - |
| I6L51_RS12800 (I6L51_12800) | 2597332..2597523 | + | 192 | WP_016152779.1 | YebW family protein | - |
| I6L51_RS12805 (I6L51_12805) | 2597524..2598165 | - | 642 | WP_080858674.1 | protein-serine/threonine phosphatase | - |
| I6L51_RS12810 (I6L51_12810) | 2598243..2599523 | - | 1281 | WP_080858673.1 | hypothetical protein | - |
| - | 2599841..2599984 | + | 144 | - | - | Antitoxin |
| - | 2599846..2599949 | - | 104 | - | - | Toxin |
| I6L51_RS12815 (I6L51_12815) | 2600104..2600442 | - | 339 | WP_080858672.1 | YebY family protein | - |
| I6L51_RS12820 (I6L51_12820) | 2600463..2601335 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| I6L51_RS12825 (I6L51_12825) | 2601339..2601713 | - | 375 | WP_080858671.1 | CopC domain-containing protein YobA | - |
| I6L51_RS12830 (I6L51_12830) | 2601857..2602087 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| I6L51_RS12835 (I6L51_12835) | 2602194..2602850 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| I6L51_RS12840 (I6L51_12840) | 2602874..2603536 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207133 NZ_CP077405:c2599949-2599846 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT207133 NZ_CP077405:2599841-2599984 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
