Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 623769..623943 | Replicon | chromosome |
| Accession | NZ_CP077331 | ||
| Organism | Lelliottia amnigena strain FDAARGOS 1446 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 623848..623938 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 623769..623943 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L76_RS02910 (I6L76_02910) | 620272..620934 | - | 663 | WP_059179721.1 | exodeoxyribonuclease X | - |
| I6L76_RS02915 (I6L76_02915) | 620959..621615 | - | 657 | WP_216981268.1 | carbon-nitrogen hydrolase family protein | - |
| I6L76_RS02920 (I6L76_02920) | 621726..621956 | - | 231 | WP_131487922.1 | DNA polymerase III subunit theta | - |
| I6L76_RS02925 (I6L76_02925) | 622094..622468 | + | 375 | WP_059179724.1 | CopC domain-containing protein YobA | - |
| I6L76_RS02930 (I6L76_02930) | 622470..623342 | + | 873 | WP_216981269.1 | copper homeostasis membrane protein CopD | - |
| I6L76_RS02935 (I6L76_02935) | 623357..623695 | + | 339 | WP_216981270.1 | YebY family protein | - |
| - | 623769..623943 | - | 175 | - | - | Antitoxin |
| - | 623848..623938 | + | 91 | - | - | Toxin |
| I6L76_RS02940 (I6L76_02940) | 624097..625038 | - | 942 | WP_216981271.1 | VirK/YbjX family protein | - |
| I6L76_RS02945 (I6L76_02945) | 625206..625850 | + | 645 | WP_216981272.1 | protein-serine/threonine phosphatase | - |
| I6L76_RS02950 (I6L76_02950) | 625851..626042 | - | 192 | WP_015959409.1 | YebW family protein | - |
| I6L76_RS02955 (I6L76_02955) | 626147..626374 | - | 228 | WP_216981273.1 | DUF1480 family protein | - |
| I6L76_RS02960 (I6L76_02960) | 626478..627920 | - | 1443 | WP_216981274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T207047 NZ_CP077331:623848-623938 [Lelliottia amnigena]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
Antitoxin
Download Length: 175 bp
>AT207047 NZ_CP077331:c623943-623769 [Lelliottia amnigena]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
