Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1609980..1610181 | Replicon | chromosome |
| Accession | NZ_CP077308 | ||
| Organism | Enterobacter hormaechei strain FDAARGOS 1433 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1610073..1610176 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1609980..1610181 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L63_RS07725 (I6L63_07725) | 1606516..1607178 | - | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
| I6L63_RS07730 (I6L63_07730) | 1607203..1607853 | - | 651 | WP_071850019.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| I6L63_RS07735 (I6L63_07735) | 1607965..1608195 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| I6L63_RS07740 (I6L63_07740) | 1608333..1608704 | + | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| I6L63_RS07745 (I6L63_07745) | 1608706..1609575 | + | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| I6L63_RS07750 (I6L63_07750) | 1609593..1609931 | + | 339 | WP_006811013.1 | YebY family protein | - |
| - | 1609980..1610181 | - | 202 | - | - | Antitoxin |
| I6L63_RS07755 (I6L63_07755) | 1610057..1610254 | - | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 1610073..1610176 | + | 104 | - | - | Toxin |
| I6L63_RS07760 (I6L63_07760) | 1610300..1611280 | - | 981 | WP_006811012.1 | VirK/YbjX family protein | - |
| I6L63_RS07765 (I6L63_07765) | 1611448..1612092 | + | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| I6L63_RS07770 (I6L63_07770) | 1612127..1612366 | - | 240 | WP_006811010.1 | YebV family protein | - |
| I6L63_RS07775 (I6L63_07775) | 1612472..1613920 | - | 1449 | WP_197682065.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1538262..1616625 | 78363 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207024 NZ_CP077308:1610073-1610176 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT207024 NZ_CP077308:c1610181-1609980 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
