Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2947011..2947154 | Replicon | chromosome |
| Accession | NZ_CP077300 | ||
| Organism | Citrobacter braakii strain FDAARGOS 1422 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2947016..2947119 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2947011..2947154 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L52_RS13980 | 2942674..2944062 | + | 1389 | WP_046276432.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L52_RS13985 | 2944163..2944399 | + | 237 | WP_029139506.1 | YebV family protein | - |
| I6L52_RS13990 | 2944502..2944693 | + | 192 | WP_016152779.1 | YebW family protein | - |
| I6L52_RS13995 | 2944694..2945335 | - | 642 | WP_016156284.1 | protein-serine/threonine phosphatase | - |
| I6L52_RS14000 | 2945413..2946693 | - | 1281 | WP_200100753.1 | hypothetical protein | - |
| - | 2947011..2947154 | + | 144 | - | - | Antitoxin |
| - | 2947016..2947119 | - | 104 | - | - | Toxin |
| I6L52_RS14005 | 2947275..2947613 | - | 339 | WP_181546044.1 | YebY family protein | - |
| I6L52_RS14010 | 2947634..2948506 | - | 873 | WP_151222752.1 | copper homeostasis membrane protein CopD | - |
| I6L52_RS14015 | 2948510..2948884 | - | 375 | WP_151222753.1 | CopC domain-containing protein YobA | - |
| I6L52_RS14020 | 2949028..2949258 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| I6L52_RS14025 | 2949365..2950021 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| I6L52_RS14030 | 2950045..2950707 | + | 663 | WP_217124702.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206998 NZ_CP077300:c2947119-2947016 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT206998 NZ_CP077300:2947011-2947154 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
