Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
Location | 1356689..1357472 | Replicon | chromosome |
Accession | NZ_CP077300 | ||
Organism | Citrobacter braakii strain FDAARGOS 1422 |
Toxin (Protein)
Gene name | yeeV | Uniprot ID | - |
Locus tag | I6L52_RS06415 | Protein ID | WP_151223123.1 |
Coordinates | 1356689..1357063 (-) | Length | 125 a.a. |
Antitoxin (Protein)
Gene name | yeeU | Uniprot ID | - |
Locus tag | I6L52_RS06420 | Protein ID | WP_217124873.1 |
Coordinates | 1357113..1357472 (-) | Length | 120 a.a. |
Genomic Context
Location: 1352018..1352515 (498 bp)
Type: Others
Protein ID: WP_151222420.1
Type: Others
Protein ID: WP_151222420.1
Location: 1353445..1354473 (1029 bp)
Type: Others
Protein ID: WP_151222422.1
Type: Others
Protein ID: WP_151222422.1
Location: 1355161..1356150 (990 bp)
Type: Others
Protein ID: WP_217124872.1
Type: Others
Protein ID: WP_217124872.1
Location: 1356154..1356612 (459 bp)
Type: Others
Protein ID: WP_223949818.1
Type: Others
Protein ID: WP_223949818.1
Location: 1352529..1353071 (543 bp)
Type: Others
Protein ID: WP_151222421.1
Type: Others
Protein ID: WP_151222421.1
Location: 1356689..1357063 (375 bp)
Type: Toxin
Protein ID: WP_151223123.1
Type: Toxin
Protein ID: WP_151223123.1
Location: 1357113..1357472 (360 bp)
Type: Antitoxin
Protein ID: WP_217124873.1
Type: Antitoxin
Protein ID: WP_217124873.1
Location: 1357495..1357716 (222 bp)
Type: Others
Protein ID: WP_004114632.1
Type: Others
Protein ID: WP_004114632.1
Location: 1357730..1358212 (483 bp)
Type: Others
Protein ID: WP_151222425.1
Type: Others
Protein ID: WP_151222425.1
Location: 1358209..1358442 (234 bp)
Type: Others
Protein ID: WP_151222426.1
Type: Others
Protein ID: WP_151222426.1
Location: 1358453..1358932 (480 bp)
Type: Others
Protein ID: WP_151222427.1
Type: Others
Protein ID: WP_151222427.1
Location: 1359012..1359833 (822 bp)
Type: Others
Protein ID: WP_151222428.1
Type: Others
Protein ID: WP_151222428.1
Location: 1359944..1360156 (213 bp)
Type: Others
Protein ID: WP_010434180.1
Type: Others
Protein ID: WP_010434180.1
Location: 1360237..1360596 (360 bp)
Type: Others
Protein ID: WP_010434179.1
Type: Others
Protein ID: WP_010434179.1
Location: 1360651..1361115 (465 bp)
Type: Others
Protein ID: WP_151222429.1
Type: Others
Protein ID: WP_151222429.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
I6L52_RS06390 (1352018) | 1352018..1352515 | + | 498 | WP_151222420.1 | Mov34/MPN/PAD-1 family protein | - |
I6L52_RS06395 (1352529) | 1352529..1353071 | - | 543 | WP_151222421.1 | 3'-5' exonuclease | - |
I6L52_RS06400 (1353445) | 1353445..1354473 | + | 1029 | WP_151222422.1 | SMEK domain-containing protein | - |
I6L52_RS06405 (1355161) | 1355161..1356150 | + | 990 | WP_217124872.1 | glycosyltransferase | - |
I6L52_RS06410 (1356154) | 1356154..1356612 | + | 459 | WP_223949818.1 | hypothetical protein | - |
I6L52_RS06415 (1356689) | 1356689..1357063 | - | 375 | WP_151223123.1 | TA system toxin CbtA family protein | Toxin |
I6L52_RS06420 (1357113) | 1357113..1357472 | - | 360 | WP_217124873.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
I6L52_RS06425 (1357495) | 1357495..1357716 | - | 222 | WP_004114632.1 | DUF987 domain-containing protein | - |
I6L52_RS06430 (1357730) | 1357730..1358212 | - | 483 | WP_151222425.1 | DNA repair protein RadC | - |
I6L52_RS06435 (1358209) | 1358209..1358442 | - | 234 | WP_151222426.1 | hypothetical protein | - |
I6L52_RS06440 (1358453) | 1358453..1358932 | - | 480 | WP_151222427.1 | antirestriction protein | - |
I6L52_RS06445 (1359012) | 1359012..1359833 | - | 822 | WP_151222428.1 | DUF932 domain-containing protein | - |
I6L52_RS06450 (1359944) | 1359944..1360156 | - | 213 | WP_010434180.1 | hypothetical protein | - |
I6L52_RS06455 (1360237) | 1360237..1360596 | - | 360 | WP_010434179.1 | hypothetical protein | - |
I6L52_RS06460 (1360651) | 1360651..1361115 | - | 465 | WP_151222429.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13885.96 Da Isoelectric Point: 9.7700
>T206997 WP_151223123.1 NZ_CP077300:c1357063-1356689 [Citrobacter braakii]
MQTQSRPPQRAASSLLSLVEIWQKLLEYLLKQHYGLMLNDTPFGNDEVIQKHIDAGISLCDAVNFIVEKYDLVRTDRHGF
SVKEQSPFIGSIDMLRARKATGLMTRKGYKTVTDITGGRSSGGK
MQTQSRPPQRAASSLLSLVEIWQKLLEYLLKQHYGLMLNDTPFGNDEVIQKHIDAGISLCDAVNFIVEKYDLVRTDRHGF
SVKEQSPFIGSIDMLRARKATGLMTRKGYKTVTDITGGRSSGGK
Download Length: 375 bp
>T206997 NZ_CP102837:15767-16078 [Klebsiella pneumoniae]
ATGCACGTAATTTCAAAAGAGCCTTTTGAGGAAGCGGCAAAGCGATATCCCAACGATTCGTTAGCCATTCGGGCGTTGTA
CCGCTTAGTGCGCGAGACGGACTTCTCTTCTCCAGCTGAGATGCTAACTCTGATACCGAGCCTGGATAATTTTAAGTACA
GGAATAAGTGGTGGGTTTTGGATGTAGGGGGCAACAACTTAAGGGTTATCGCCTATATCAATTTCGTAAATAAGCGCTTC
TACGTGAAGCACATCGCAACCCACGCTGATTACGACAAGTTGACCCGCTATTACAGGGAGAACAAAGAATGA
ATGCACGTAATTTCAAAAGAGCCTTTTGAGGAAGCGGCAAAGCGATATCCCAACGATTCGTTAGCCATTCGGGCGTTGTA
CCGCTTAGTGCGCGAGACGGACTTCTCTTCTCCAGCTGAGATGCTAACTCTGATACCGAGCCTGGATAATTTTAAGTACA
GGAATAAGTGGTGGGTTTTGGATGTAGGGGGCAACAACTTAAGGGTTATCGCCTATATCAATTTCGTAAATAAGCGCTTC
TACGTGAAGCACATCGCAACCCACGCTGATTACGACAAGTTGACCCGCTATTACAGGGAGAACAAAGAATGA
Antitoxin
Download Length: 120 a.a. Molecular weight: 13338.41 Da Isoelectric Point: 7.3727
>AT206997 WP_217124873.1 NZ_CP077300:c1357472-1357113 [Citrobacter braakii]
MQKATRVINHNIAEPWWGLRRNITPCFGARLVQEGNHLHYLADRASIAGTFSDADLRHLDQAFPVLMKQMELMLTSNELT
PHIQRCITLHAKGLICEADTLGSCGYLYIVIYPTSATTA
MQKATRVINHNIAEPWWGLRRNITPCFGARLVQEGNHLHYLADRASIAGTFSDADLRHLDQAFPVLMKQMELMLTSNELT
PHIQRCITLHAKGLICEADTLGSCGYLYIVIYPTSATTA
Download Length: 360 bp
>AT206997 NZ_CP102837:16075-16494 [Klebsiella pneumoniae]
ATGATTACCGACACTGCAAAAGCCATTGAAGCAACCAAACAACTCGTAGCTGCCGTCCCCTTCCTAGGGGGCAGTTCTTC
CGAGAGCGATTACCGCGAAGCGATGGAGCTGGTGGATTATCTGATCGAGAACGACGACGAGAACCCACTTATTGACTTCC
TGGCGAGTAAGATTGCCGACTATGAAGATAACAGCCCTCGTTTCGCTGAGTTCAACAAAGCTATTGCTGAAATACCAGTC
GGCGTTGCACTTCTGCGAACCCTGATTGACCAGCACAAGCTGTCTTATTCAGACCTTAAGGATGAGATCGGATCTAAATC
ATTGGTCAGCCAAATCCTGTCAGGGCAGCGCTCTTTGACCATCACTCACATAAAAGCTCTTTCCGCGCGCTTCGGTGTAA
AACCTGAGTGGTTCCTATAA
ATGATTACCGACACTGCAAAAGCCATTGAAGCAACCAAACAACTCGTAGCTGCCGTCCCCTTCCTAGGGGGCAGTTCTTC
CGAGAGCGATTACCGCGAAGCGATGGAGCTGGTGGATTATCTGATCGAGAACGACGACGAGAACCCACTTATTGACTTCC
TGGCGAGTAAGATTGCCGACTATGAAGATAACAGCCCTCGTTTCGCTGAGTTCAACAAAGCTATTGCTGAAATACCAGTC
GGCGTTGCACTTCTGCGAACCCTGATTGACCAGCACAAGCTGTCTTATTCAGACCTTAAGGATGAGATCGGATCTAAATC
ATTGGTCAGCCAAATCCTGTCAGGGCAGCGCTCTTTGACCATCACTCACATAAAAGCTCTTTCCGCGCGCTTCGGTGTAA
AACCTGAGTGGTTCCTATAA