Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3188444..3188590 | Replicon | chromosome |
| Accession | NZ_CP077293 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS 1442 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3188452..3188555 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3188444..3188590 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L72_RS14950 (I6L72_14950) | 3183746..3184264 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| I6L72_RS14955 (I6L72_14955) | 3184282..3185031 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| I6L72_RS14960 (I6L72_14960) | 3185034..3187358 | + | 2325 | WP_015705944.1 | fimbria/pilus outer membrane usher protein | - |
| I6L72_RS14965 (I6L72_14965) | 3187371..3188324 | + | 954 | WP_015705945.1 | spore coat U domain-containing protein | - |
| - | 3188444..3188590 | + | 147 | - | - | Antitoxin |
| - | 3188452..3188555 | - | 104 | - | - | Toxin |
| I6L72_RS14970 (I6L72_14970) | 3188712..3189053 | - | 342 | WP_015705946.1 | YebY family protein | - |
| I6L72_RS14975 (I6L72_14975) | 3189067..3189936 | - | 870 | WP_015705947.1 | copper homeostasis membrane protein CopD | - |
| I6L72_RS14980 (I6L72_14980) | 3189940..3190314 | - | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| I6L72_RS14985 (I6L72_14985) | 3190449..3190679 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| I6L72_RS14990 (I6L72_14990) | 3190759..3191418 | + | 660 | WP_217068080.1 | exodeoxyribonuclease X | - |
| I6L72_RS14995 (I6L72_14995) | 3191421..3193481 | - | 2061 | WP_015705949.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206985 NZ_CP077293:c3188555-3188452 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT206985 NZ_CP077293:3188444-3188590 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
