Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1937442..1937646 | Replicon | chromosome |
| Accession | NZ_CP077291 | ||
| Organism | Citrobacter farmeri strain FDAARGOS 1423 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1937537..1937640 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1937442..1937646 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L53_RS09100 (I6L53_09100) | 1933959..1934621 | - | 663 | WP_042318450.1 | exodeoxyribonuclease X | - |
| I6L53_RS09105 (I6L53_09105) | 1934645..1935301 | - | 657 | WP_042318452.1 | carbon-nitrogen hydrolase family protein | - |
| I6L53_RS09110 (I6L53_09110) | 1935409..1935639 | - | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| I6L53_RS09115 (I6L53_09115) | 1935777..1936151 | + | 375 | WP_042318457.1 | CopC domain-containing protein YobA | - |
| I6L53_RS09120 (I6L53_09120) | 1936154..1937026 | + | 873 | WP_042318459.1 | copper homeostasis membrane protein CopD | - |
| I6L53_RS09125 (I6L53_09125) | 1937043..1937381 | + | 339 | WP_042318461.1 | YebY family protein | - |
| - | 1937442..1937646 | - | 205 | - | - | Antitoxin |
| - | 1937537..1937640 | + | 104 | - | - | Toxin |
| I6L53_RS09130 (I6L53_09130) | 1937790..1938452 | + | 663 | WP_042318462.1 | protein-serine/threonine phosphatase | - |
| I6L53_RS09135 (I6L53_09135) | 1938453..1938644 | - | 192 | WP_042318465.1 | YebW family protein | - |
| I6L53_RS09140 (I6L53_09140) | 1938746..1938982 | - | 237 | WP_167382411.1 | YebV family protein | - |
| I6L53_RS09145 (I6L53_09145) | 1939097..1940536 | - | 1440 | WP_072015681.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206963 NZ_CP077291:1937537-1937640 [Citrobacter farmeri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 205 bp
>AT206963 NZ_CP077291:c1937646-1937442 [Citrobacter farmeri]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGGCTTACGCGG
CCTGAAAAAAACGGTGATGGTCACTGCCTGAAATGTAAAAACCGC
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGGCTTACGCGG
CCTGAAAAAAACGGTGATGGTCACTGCCTGAAATGTAAAAACCGC
