Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 573331..573540 | Replicon | chromosome |
| Accession | NZ_CP077264 | ||
| Organism | Enterobacter hormaechei strain FDAARGOS 1434 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 573424..573527 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 573331..573540 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L64_RS02800 (I6L64_02800) | 569869..570531 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| I6L64_RS02805 (I6L64_02805) | 570555..571205 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| I6L64_RS02810 (I6L64_02810) | 571317..571547 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| I6L64_RS02815 (I6L64_02815) | 571685..572056 | + | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| I6L64_RS02820 (I6L64_02820) | 572058..572927 | + | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| I6L64_RS02825 (I6L64_02825) | 572944..573282 | + | 339 | WP_033486805.1 | YebY family protein | - |
| - | 573331..573540 | - | 210 | - | - | Antitoxin |
| I6L64_RS02830 (I6L64_02830) | 573408..573605 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 573424..573527 | + | 104 | - | - | Toxin |
| I6L64_RS02835 (I6L64_02835) | 573651..574631 | - | 981 | WP_033486806.1 | VirK/YbjX family protein | - |
| I6L64_RS02840 (I6L64_02840) | 574799..575443 | + | 645 | WP_069595855.1 | protein-serine/threonine phosphatase | - |
| I6L64_RS02845 (I6L64_02845) | 575478..575717 | - | 240 | WP_003859885.1 | YebV family protein | - |
| I6L64_RS02850 (I6L64_02850) | 575824..577272 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206894 NZ_CP077264:573424-573527 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT206894 NZ_CP077264:c573540-573331 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
