Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1933689..1933831 Replicon chromosome
Accession NC_003198
Organism Salmonella enterica subsp. enterica serovar Typhi str. CT18

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1933690..1933792 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1933689..1933831 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1931946..1932124 - 179 NuclAT_0 - -
- 1931946..1932124 - 179 NuclAT_0 - -
- 1931946..1932124 - 179 NuclAT_0 - -
- 1931946..1932124 - 179 NuclAT_0 - -
- 1933689..1933831 + 143 - - Antitoxin
- 1933690..1933792 - 103 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 1864800..1955704 90904


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T20689 NC_003198:c1933792-1933690 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT

Antitoxin


Download         Length: 143 bp

>AT20689 NC_003198:1933689-1933831 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References