Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2339303..2339510 | Replicon | chromosome |
| Accession | NZ_CP077262 | ||
| Organism | Citrobacter pasteurii strain FDAARGOS 1424 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2339405..2339508 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2339303..2339510 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L54_RS11370 (I6L54_11370) | 2335822..2336484 | - | 663 | WP_005120729.1 | exodeoxyribonuclease X | - |
| I6L54_RS11375 (I6L54_11375) | 2336508..2337164 | - | 657 | WP_005120730.1 | carbon-nitrogen hydrolase family protein | - |
| I6L54_RS11380 (I6L54_11380) | 2337271..2337501 | - | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| I6L54_RS11385 (I6L54_11385) | 2337644..2338018 | + | 375 | WP_040232388.1 | CopC domain-containing protein YobA | - |
| I6L54_RS11390 (I6L54_11390) | 2338022..2338894 | + | 873 | WP_040232387.1 | copper homeostasis membrane protein CopD | - |
| I6L54_RS11395 (I6L54_11395) | 2338911..2339249 | + | 339 | WP_040232386.1 | YebY family protein | - |
| - | 2339303..2339510 | - | 208 | - | - | Antitoxin |
| - | 2339405..2339508 | + | 104 | - | - | Toxin |
| I6L54_RS11400 (I6L54_11400) | 2339864..2340694 | + | 831 | WP_052463771.1 | GIY-YIG nuclease family protein | - |
| I6L54_RS11405 (I6L54_11405) | 2340783..2341424 | + | 642 | WP_040232384.1 | protein-serine/threonine phosphatase | - |
| I6L54_RS11410 (I6L54_11410) | 2341425..2341616 | - | 192 | WP_005120744.1 | YebW family protein | - |
| I6L54_RS11415 (I6L54_11415) | 2341689..2342606 | - | 918 | WP_052463770.1 | LysR substrate-binding domain-containing protein | - |
| I6L54_RS24290 | 2342676..2343071 | + | 396 | WP_245163448.1 | MFS transporter | - |
| I6L54_RS11420 (I6L54_11420) | 2343068..2343913 | + | 846 | WP_245163447.1 | MFS transporter | - |
| I6L54_RS11425 (I6L54_11425) | 2343941..2344177 | - | 237 | WP_029139506.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2333741..2348471 | 14730 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206881 NZ_CP077262:2339405-2339508 [Citrobacter pasteurii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT206881 NZ_CP077262:c2339510-2339303 [Citrobacter pasteurii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGTCTG
AAAAAAAGGGGGATTGTCACTCGCTGCAATGTAAAAACCGCAAGTTCT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGTCTG
AAAAAAAGGGGGATTGTCACTCGCTGCAATGTAAAAACCGCAAGTTCT
