Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4237908..4238176 | Replicon | chromosome |
| Accession | NZ_CP077242 | ||
| Organism | Escherichia fergusonii strain FDAARGOS 1438 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4237946..4238049 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4237908..4238176 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L68_RS20285 | 4235065..4236504 | + | 1440 | WP_002431585.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L68_RS20290 | 4236623..4236859 | + | 237 | WP_002431586.1 | YebV family protein | - |
| I6L68_RS20295 | 4236964..4237155 | + | 192 | WP_002431587.1 | YebW family protein | - |
| I6L68_RS20300 | 4237156..4237812 | - | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| - | 4237908..4238176 | + | 269 | - | - | Antitoxin |
| - | 4237946..4238049 | - | 104 | - | - | Toxin |
| I6L68_RS20305 | 4238206..4238547 | - | 342 | WP_000976177.1 | YebY family protein | - |
| I6L68_RS20310 | 4238559..4239431 | - | 873 | WP_000928495.1 | copper homeostasis membrane protein CopD | - |
| I6L68_RS20315 | 4239434..4239808 | - | 375 | WP_217059691.1 | CopC domain-containing protein YobA | - |
| I6L68_RS20320 | 4239947..4240177 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| I6L68_RS20325 | 4240284..4240940 | + | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| I6L68_RS20330 | 4240964..4241626 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206856 NZ_CP077242:c4238049-4237946 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT206856 NZ_CP077242:4237908-4238176 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
