Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4385498..4385672 | Replicon | chromosome |
| Accession | NZ_CP077236 | ||
| Organism | Lelliottia amnigena strain FDAARGOS 1444 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4385503..4385593 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4385498..4385672 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L74_RS20715 (I6L74_20715) | 4381509..4382951 | + | 1443 | WP_059179729.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L74_RS20720 (I6L74_20720) | 4383055..4383294 | + | 240 | WP_015959408.1 | YebV family protein | - |
| I6L74_RS20725 (I6L74_20725) | 4383399..4383590 | + | 192 | WP_015959409.1 | YebW family protein | - |
| I6L74_RS20730 (I6L74_20730) | 4383591..4384235 | - | 645 | WP_059179728.1 | protein-serine/threonine phosphatase | - |
| I6L74_RS20735 (I6L74_20735) | 4384403..4385344 | + | 942 | WP_059179727.1 | VirK/YbjX family protein | - |
| - | 4385498..4385672 | + | 175 | - | - | Antitoxin |
| - | 4385503..4385593 | - | 91 | - | - | Toxin |
| I6L74_RS20740 (I6L74_20740) | 4385747..4386085 | - | 339 | WP_059179726.1 | YebY family protein | - |
| I6L74_RS20745 (I6L74_20745) | 4386100..4386972 | - | 873 | WP_059179725.1 | copper homeostasis membrane protein CopD | - |
| I6L74_RS20750 (I6L74_20750) | 4386974..4387348 | - | 375 | WP_059179724.1 | CopC domain-containing protein YobA | - |
| I6L74_RS20755 (I6L74_20755) | 4387486..4387716 | + | 231 | WP_059179723.1 | DNA polymerase III subunit theta | - |
| I6L74_RS20760 (I6L74_20760) | 4387827..4388483 | + | 657 | WP_059179722.1 | carbon-nitrogen hydrolase family protein | - |
| I6L74_RS20765 (I6L74_20765) | 4388508..4389170 | + | 663 | WP_059179721.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T206829 NZ_CP077236:c4385593-4385503 [Lelliottia amnigena]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
Antitoxin
Download Length: 175 bp
>AT206829 NZ_CP077236:4385498-4385672 [Lelliottia amnigena]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
