Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3278328..3278471 | Replicon | chromosome |
| Accession | NZ_CP077211 | ||
| Organism | Enterobacter cloacae strain FDAARGOS 1431 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3278363..3278466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3278328..3278471 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L61_RS15880 (I6L61_15880) | 3274812..3275474 | - | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
| I6L61_RS15885 (I6L61_15885) | 3275498..3276148 | - | 651 | WP_013096101.1 | carbon-nitrogen hydrolase family protein | - |
| I6L61_RS15890 (I6L61_15890) | 3276258..3276488 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| I6L61_RS15895 (I6L61_15895) | 3276626..3276997 | + | 372 | WP_013096103.1 | CopC domain-containing protein YobA | - |
| I6L61_RS15900 (I6L61_15900) | 3276999..3277868 | + | 870 | WP_013096104.1 | copper homeostasis membrane protein CopD | - |
| I6L61_RS15905 (I6L61_15905) | 3277885..3278223 | + | 339 | WP_013096105.1 | YebY family protein | - |
| - | 3278328..3278471 | - | 144 | - | - | Antitoxin |
| - | 3278363..3278466 | + | 104 | - | - | Toxin |
| I6L61_RS15910 (I6L61_15910) | 3279648..3280495 | - | 848 | Protein_3089 | benzoate transporter | - |
| I6L61_RS15915 (I6L61_15915) | 3281285..3282226 | - | 942 | WP_013096111.1 | VirK/YbjX family protein | - |
| I6L61_RS15920 (I6L61_15920) | 3282393..3283037 | + | 645 | WP_013096112.1 | protein-serine/threonine phosphatase | - |
| I6L61_RS15925 (I6L61_15925) | 3283071..3283310 | - | 240 | WP_013096113.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206801 NZ_CP077211:3278363-3278466 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT206801 NZ_CP077211:c3278471-3278328 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
