Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2819457..2819599 | Replicon | chromosome |
| Accession | NZ_CP077206 | ||
| Organism | Enterobacter bugandensis strain FDAARGOS 1427 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2819461..2819564 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2819457..2819599 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L57_RS13410 (I6L57_13410) | 2814632..2816080 | + | 1449 | WP_197710704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L57_RS13415 (I6L57_13415) | 2816186..2816425 | + | 240 | WP_008500472.1 | YebV family protein | - |
| I6L57_RS13420 (I6L57_13420) | 2816460..2817104 | - | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| I6L57_RS13425 (I6L57_13425) | 2817273..2818214 | + | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| I6L57_RS13430 (I6L57_13430) | 2818387..2819262 | + | 876 | WP_088205094.1 | benzoate transporter | - |
| - | 2819457..2819599 | + | 143 | - | - | Antitoxin |
| - | 2819461..2819564 | - | 104 | - | - | Toxin |
| I6L57_RS13435 (I6L57_13435) | 2819704..2820042 | - | 339 | WP_028013604.1 | YebY family protein | - |
| I6L57_RS13440 (I6L57_13440) | 2820059..2820928 | - | 870 | WP_088205057.1 | copper homeostasis membrane protein CopD | - |
| I6L57_RS13445 (I6L57_13445) | 2820930..2821301 | - | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| I6L57_RS13450 (I6L57_13450) | 2821438..2821668 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| I6L57_RS13455 (I6L57_13455) | 2821779..2822429 | + | 651 | WP_045260312.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| I6L57_RS13460 (I6L57_13460) | 2822454..2823116 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206781 NZ_CP077206:c2819564-2819461 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT206781 NZ_CP077206:2819457-2819599 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
