Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 3643585..3644038 Replicon chromosome
Accession NZ_CP077092
Organism Pseudomonas iranensis strain SWRI54

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HU724_RS16235 Protein ID WP_262137240.1
Coordinates 3643826..3644038 (+) Length 71 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HU724_RS16230 Protein ID WP_186569711.1
Coordinates 3643585..3643779 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HU724_RS16205 (HU724_016205) 3638788..3639585 + 798 WP_186569715.1 ATP-binding cassette domain-containing protein -
HU724_RS16210 (HU724_016210) 3639579..3640406 + 828 WP_186569714.1 ABC transporter permease -
HU724_RS16215 (HU724_016215) 3640403..3641170 + 768 WP_186569713.1 phosphonate ABC transporter, permease protein PhnE -
HU724_RS16220 (HU724_016220) 3641349..3643028 + 1680 WP_186569712.1 MFS transporter -
HU724_RS16225 (HU724_016225) 3643136..3643354 + 219 WP_042606898.1 hypothetical protein -
HU724_RS16230 (HU724_016230) 3643585..3643779 + 195 WP_186569711.1 stability determinant Antitoxin
HU724_RS16235 (HU724_016235) 3643826..3644038 + 213 WP_262137240.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-69)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 71 a.a.        Molecular weight: 7928.34 Da        Isoelectric Point: 12.0743

>T206725 WP_262137240.1 NZ_CP077092:3643826-3644038 [Pseudomonas iranensis]
IEQFNLRASASLLRKVGAAAQTLSSVPHGFRFGRIPGTREMVIHPNYLLVYRVNGQIRILTVIHARKKYP

Download         Length: 213 bp

>T206725 NZ_CP102669:3809341-3809616 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGAATGCCTCCGGCGTCAGCGTCCGCCATATCAACAGCGAAACCTGCATGACCGCCTGTTACTCACAAATCCCCAGCCA
GCACCTTAAGGGTGACTGGCAGGAAGAAGCGGGATTTGAGACCGGGCACGGCGTCACCGTGAAGATCTCCGAGGGGTGTT
TGATCCTGATTGCAGAGACGGACGAAGTGAGGGATCTACGGAAGGAGCTTTATCAGGTGAAAAAGTCGATGAAGCATATT
AAGGCGGGGGTAAATAATGTGGTGAACGGGGATTAA

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7259.16 Da        Isoelectric Point: 4.5680

>AT206725 WP_186569711.1 NZ_CP077092:3643585-3643779 [Pseudomonas iranensis]
MSAELSLIVSDFETEEEAASYDLWYRAKVQAALDDPRPGIPHDEAMVILAQKIEERRKNRRAAG

Download         Length: 195 bp

>AT206725 NZ_CP102669:c3809606-3809184 [Salmonella enterica subsp. enterica serovar Typhimurium]
TTCACCACATTATTTACCCCCGCCTTAATATGCTTCATCGACTTTTTCACCTGATAAAGCTCCTTCCGTAGATCCCTCAC
TTCGTCCGTCTCTGCAATCAGGATCAAACACCCCTCGGAGATCTTCACGGTGACGCCGTGCCCGGTCTCAAATCCCGCTT
CTTCCTGCCAGTCACCCTTAAGGTGCTGGCTGGGGATTTGTGAGTAACAGGCGGTCATGCAGGTTTCGCTGTTGATATGG
CGGACGCTGACGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTATTTATCCGCCGGATGCTGGCTGATTGTGGA
GCTCAGGGTGAGTGAGTATGGGCGCGACATCCTGGCACCGCGCCTCCCTCTCCCCGGCCAGCCCCGGCCGGTGATGAGCA
GCCGGCTGCCGGGGCCGTATTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References