Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 4342020..4342500 Replicon chromosome
Accession NZ_CP077090
Organism Pseudomonas zeae strain OE 48.2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HU754_RS19015 Protein ID WP_186624635.1
Coordinates 4342216..4342500 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HU754_RS19010 Protein ID WP_099758590.1
Coordinates 4342020..4342226 (+) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HU754_RS18995 (HU754_018995) 4337459..4339693 + 2235 WP_099758593.1 Ig-like domain-containing protein -
HU754_RS19000 (HU754_019000) 4339766..4340230 + 465 WP_093439216.1 curlin -
HU754_RS19005 (HU754_019005) 4340258..4341709 + 1452 WP_186624634.1 curlin -
HU754_RS19010 (HU754_019010) 4342020..4342226 + 207 WP_099758590.1 antitoxin Antitoxin
HU754_RS19015 (HU754_019015) 4342216..4342500 + 285 WP_186624635.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HU754_RS19020 (HU754_019020) 4342575..4342793 - 219 WP_186624636.1 hypothetical protein -
HU754_RS19025 (HU754_019025) 4343063..4343431 - 369 WP_186624637.1 DUF6124 family protein -
HU754_RS19030 (HU754_019030) 4345480..4346340 - 861 WP_186624638.1 CsgG/HfaB family protein -
HU754_RS19035 (HU754_019035) 4346370..4346801 - 432 WP_093439234.1 curli assembly protein CsgF -
HU754_RS19040 (HU754_019040) 4346798..4347190 - 393 WP_186624639.1 curli production assembly/transport protein CsgE -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-85)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10813.64 Da        Isoelectric Point: 10.3399

>T206705 WP_186624635.1 NZ_CP077090:4342216-4342500 [Pseudomonas zeae]
MQIKWRPKARVELSKILKYIGERNFVAATALHKSVVKTTSALCWHPHLYRKGRSPGTREIVVSPNYLVVYQVADQIEIVS
ILHARQEYPRCDPG

Download         Length: 285 bp

>T206705 NZ_CP102627:864326-864673 [Listeria innocua]
CTGATGGTGAAGCGTGGTGACGTTTACTACGCGGACCTTTCCCCCGTGGTCGGAAGCGAGCAAGGGGGAATAAGGCCTGT
TCTCATCATTCAAAATGATATTGGTAATAGATTCAGTCCAACTGTGATCGTGGCAGCAATAACTGCAAAAATTCAAAAAG
CGAAGTTGCCAACACATGTGGAAGCTACTCGTAAAGACGGCTTTGAAAGAGATTCTGTCATTCTATTAGAACAAATTAGA
ACGATAGATAAACAACGCCTGACAGATAAGATTACACATTTGGACGAGGAACTAATGGCCAAGGTAAATCAGGCACTTGA
AGTCAGTCTAGGAGTAGTAGAATTCTAA

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7731.67 Da        Isoelectric Point: 3.9129

>AT206705 WP_099758590.1 NZ_CP077090:4342020-4342226 [Pseudomonas zeae]
MIDPKMIDPLCPVVSDLDPEEQAASYDRWFRAEVQASLDDPRPSIPHEQVMEEINALMESMRKSADAD

Download         Length: 207 bp

>AT206705 NZ_CP102627:864044-864322 [Listeria innocua]
GTGTTAGAGAAAGAAAAACGGATGATAATATCCGTAGAACTGACACAGGAAATGGTACAAGAACTCGACGTAGTTGTAGA
AAAAGAAAAAATGGGGCGGAGTGAAGTTATAATGGAAGCAACGCAACAATTTTTACAGGAGAAAAGAGCTCGTGAATTAA
GAGACGAGATGGAACGCGGCTATGCAGAAATGGCGACGATTAATTTCGCTATCGCGTGCGAGTGTACTCATGTCGAAGCA
GAGGCAGAAGACAGGAATATTAGTATTTTAGGAGGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References