Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2032749..2032843 Replicon chromosome
Accession NC_003143
Organism Yersinia pestis CO92

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2032749..2032842 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2032749..2032843 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPO_RS09890 2028321..2029271 + 951 WP_002211090.1 prolyl aminopeptidase -
YPO_RS09895 2029331..2029561 - 231 WP_002211091.1 DNA polymerase III subunit theta -
YPO_RS09900 2029962..2030471 + 510 WP_002211092.1 non-heme ferritin -
YPO_RS09905 2030868..2031254 + 387 WP_002211093.1 CopC domain-containing protein YobA -
YPO_RS09910 2031257..2032141 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
YPO_RS09915 2032238..2032579 + 342 WP_002211095.1 YebY family protein -
- 2032749..2032842 + 94 - - Toxin
- 2032749..2032843 - 95 - - Antitoxin
YPO_RS09920 2033102..2033428 - 327 WP_002211097.1 DUF1493 family protein -
YPO_RS09925 2033422..2033880 - 459 WP_002211098.1 hypothetical protein -
YPO_RS09930 2034412..2035572 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
YPO_RS09935 2035572..2037650 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T20669 NC_003143:2032749-2032842 [Yersinia pestis CO92]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT20669 NC_003143:c2032843-2032749 [Yersinia pestis CO92]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References