Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
Location | 2064283..2064839 | Replicon | chromosome |
Accession | NZ_CP076853 | ||
Organism | Rhizobium sp. WYJ-E13 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | KQ933_RS10370 | Protein ID | WP_216758688.1 |
Coordinates | 2064549..2064839 (+) | Length | 97 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | KQ933_RS10365 | Protein ID | WP_216758687.1 |
Coordinates | 2064283..2064561 (+) | Length | 93 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KQ933_RS33400 | 2059887..2061233 | - | 1347 | WP_253958314.1 | hypothetical protein | - |
KQ933_RS10350 (KQ933_10350) | 2061426..2061989 | + | 564 | WP_216758684.1 | transglutaminase-like cysteine peptidase | - |
KQ933_RS10355 (KQ933_10355) | 2062194..2063543 | + | 1350 | WP_216758685.1 | prolyl oligopeptidase family serine peptidase | - |
KQ933_RS10360 (KQ933_10360) | 2063651..2064100 | + | 450 | WP_216758686.1 | DUF3597 domain-containing protein | - |
KQ933_RS10365 (KQ933_10365) | 2064283..2064561 | + | 279 | WP_216758687.1 | CopG family ribbon-helix-helix protein | Antitoxin |
KQ933_RS10370 (KQ933_10370) | 2064549..2064839 | + | 291 | WP_216758688.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
KQ933_RS10375 (KQ933_10375) | 2064887..2065183 | - | 297 | WP_216758689.1 | YkgJ family cysteine cluster protein | - |
KQ933_RS10380 (KQ933_10380) | 2065465..2066946 | + | 1482 | WP_216758690.1 | ATPase domain-containing protein | - |
KQ933_RS10385 (KQ933_10385) | 2066960..2069017 | + | 2058 | WP_216758691.1 | hybrid sensor histidine kinase/response regulator | - |
KQ933_RS10390 (KQ933_10390) | 2069268..2069531 | + | 264 | WP_216758692.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11049.76 Da Isoelectric Point: 9.0234
>T206568 WP_216758688.1 NZ_CP076853:2064549-2064839 [Rhizobium sp. WYJ-E13]
MPQVVFSPAAIRDLQRLRDLLTPKNPSAARRAGETILAGVRTLCLHPHMGRLIEDLPEQYREWLIDFGDSGYVARYRFDQ
NTVTILAVRHQKEAMF
MPQVVFSPAAIRDLQRLRDLLTPKNPSAARRAGETILAGVRTLCLHPHMGRLIEDLPEQYREWLIDFGDSGYVARYRFDQ
NTVTILAVRHQKEAMF
Download Length: 291 bp
>T206568 NZ_CP102488:3151234-3151611 [Escherichia coli O15:H18]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCGCGTCCGTCTCCTGTTGAAATCTGGCAGACACTGCTGTC
CCGCCTGCTGGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCTCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCGCGTCCGTCTCCTGTTGAAATCTGGCAGACACTGCTGTC
CCGCCTGCTGGACCAGCATTACGGCCTTACGCTGAATGACACACCGTTCTCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10672.89 Da Isoelectric Point: 4.9192
>AT206568 WP_216758687.1 NZ_CP076853:2064283-2064561 [Rhizobium sp. WYJ-E13]
MASPTSLKLDDELKGRVQHLAELRRRSSHWIMREAIAQYVAREEKREALRQQTLDAWDEFQATGLHVTGDEVETWLSTWG
TDDELPAPECHK
MASPTSLKLDDELKGRVQHLAELRRRSSHWIMREAIAQYVAREEKREALRQQTLDAWDEFQATGLHVTGDEVETWLSTWG
TDDELPAPECHK
Download Length: 279 bp
>AT206568 NZ_CP102488:3150776-3151144 [Escherichia coli O15:H18]
GTGTCAGACACGCACCATGAGACAAATTATCCCGACGACTATAACAACCGCCCCTGGTGGGGGCTGCCCTGCACCATAAC
ACCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGTATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATACTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCCAGAGGACTGACCTGCGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACGCACCATGAGACAAATTATCCCGACGACTATAACAACCGCCCCTGGTGGGGGCTGCCCTGCACCATAAC
ACCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGTATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGACGCGGATGCGTACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATACTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCCAGAGGACTGACCTGCGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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