Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1630324..1630505 | Replicon | chromosome |
| Accession | NZ_CP076838 | ||
| Organism | Leclercia pneumoniae strain 49125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1630389..1630492 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1630324..1630505 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ929_RS07895 (KQ929_07895) | 1627298..1627960 | - | 663 | WP_207291958.1 | exodeoxyribonuclease X | - |
| KQ929_RS07900 (KQ929_07900) | 1628285..1628515 | - | 231 | WP_040075148.1 | DNA polymerase III subunit theta | - |
| KQ929_RS07905 (KQ929_07905) | 1628653..1629018 | + | 366 | WP_207291957.1 | CopC domain-containing protein YobA | - |
| KQ929_RS07910 (KQ929_07910) | 1629020..1629892 | + | 873 | WP_207291956.1 | copper homeostasis membrane protein CopD | - |
| KQ929_RS07915 (KQ929_07915) | 1629909..1630247 | + | 339 | WP_040075152.1 | YebY family protein | - |
| - | 1630324..1630505 | - | 182 | - | - | Antitoxin |
| - | 1630389..1630492 | + | 104 | - | - | Toxin |
| KQ929_RS07920 (KQ929_07920) | 1630780..1631424 | + | 645 | WP_207291955.1 | protein-serine/threonine phosphatase | - |
| KQ929_RS07925 (KQ929_07925) | 1631425..1631616 | - | 192 | WP_040075154.1 | YebW family protein | - |
| KQ929_RS07930 (KQ929_07930) | 1631719..1631958 | - | 240 | WP_040075156.1 | YebV family protein | - |
| KQ929_RS07935 (KQ929_07935) | 1632062..1633504 | - | 1443 | WP_207291954.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206518 NZ_CP076838:1630389-1630492 [Leclercia pneumoniae]
GCAAGGCGACTTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 182 bp
>AT206518 NZ_CP076838:c1630505-1630324 [Leclercia pneumoniae]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTTAAGTCGCCTTGCACTATAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCATC
AAAAGTGGTCAGAAAAAAAGCG
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTTAAGTCGCCTTGCACTATAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCATC
AAAAGTGGTCAGAAAAAAAGCG
