Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2092639..2092910 | Replicon | chromosome |
| Accession | NZ_CP076709 | ||
| Organism | Escherichia coli O158:H23 strain CFIAFB20140388 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2092677..2092780 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2092639..2092910 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ220_RS10020 | 2089795..2091234 | + | 1440 | WP_024165618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KQ220_RS10025 | 2091352..2091588 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KQ220_RS10030 | 2091693..2091884 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KQ220_RS10035 | 2091885..2092542 | - | 658 | Protein_1973 | protein-serine/threonine phosphatase | - |
| - | 2092639..2092910 | + | 272 | - | - | Antitoxin |
| - | 2092677..2092780 | - | 104 | - | - | Toxin |
| KQ220_RS10040 | 2092938..2093279 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KQ220_RS10045 | 2093292..2094164 | - | 873 | WP_112004944.1 | copper homeostasis membrane protein CopD | - |
| KQ220_RS10050 | 2094168..2094542 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| KQ220_RS10055 | 2094681..2094911 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KQ220_RS10060 | 2095013..2095669 | + | 657 | WP_216781486.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KQ220_RS10065 | 2095693..2096355 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2076798..2116694 | 39896 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206421 NZ_CP076709:c2092780-2092677 [Escherichia coli O158:H23]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT206421 NZ_CP076709:2092639-2092910 [Escherichia coli O158:H23]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
