Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 567961..568229 | Replicon | chromosome |
| Accession | NZ_CP076706 | ||
| Organism | Escherichia coli O170:H18 strain CFIAFB20120266 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 567999..568101 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 567961..568229 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ217_RS02865 | 565118..566557 | + | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KQ217_RS02870 | 566675..566911 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KQ217_RS02875 | 567016..567207 | + | 192 | WP_001317886.1 | YebW family protein | - |
| KQ217_RS02880 | 567208..567864 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 567961..568229 | + | 269 | - | - | Antitoxin |
| - | 567999..568101 | - | 103 | - | - | Toxin |
| KQ217_RS02885 | 568259..568600 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KQ217_RS02890 | 568613..569485 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| KQ217_RS02895 | 569489..569863 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KQ217_RS02900 | 570002..570232 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KQ217_RS02905 | 570334..570990 | + | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KQ217_RS02910 | 571014..571676 | + | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T206381 NZ_CP076706:c568101-567999 [Escherichia coli O170:H18]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT206381 NZ_CP076706:567961-568229 [Escherichia coli O170:H18]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
