Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989787..1990058 | Replicon | chromosome |
| Accession | NZ_CP076704 | ||
| Organism | Escherichia coli O8:H28 strain BMH-17-0027 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989917..1990020 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989787..1990058 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ221_RS09565 | 1986342..1987004 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KQ221_RS09570 | 1987028..1987684 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KQ221_RS09575 | 1987786..1988016 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KQ221_RS09580 | 1988155..1988529 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KQ221_RS09585 | 1988533..1989405 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KQ221_RS09590 | 1989418..1989759 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1989787..1990058 | - | 272 | - | - | Antitoxin |
| - | 1989917..1990020 | + | 104 | - | - | Toxin |
| KQ221_RS09595 | 1990155..1990811 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| KQ221_RS09600 | 1990812..1991003 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KQ221_RS09605 | 1991108..1991344 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KQ221_RS09610 | 1991462..1992901 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206353 NZ_CP076704:1989917-1990020 [Escherichia coli O8:H28]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT206353 NZ_CP076704:c1990058-1989787 [Escherichia coli O8:H28]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
