Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3371775..3372609 | Replicon | chromosome |
| Accession | NZ_CP076687 | ||
| Organism | Escherichia coli strain S22EC | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PLF5 |
| Locus tag | KQ258_RS16550 | Protein ID | WP_000854690.1 |
| Coordinates | 3372232..3372609 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1P7N8 |
| Locus tag | KQ258_RS16545 | Protein ID | WP_001305076.1 |
| Coordinates | 3371775..3372143 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ258_RS16505 (3366857) | 3366857..3367984 | + | 1128 | Protein_3255 | hypothetical protein | - |
| KQ258_RS16510 (3368060) | 3368060..3368515 | + | 456 | WP_000581502.1 | IrmA family protein | - |
| KQ258_RS16515 (3368594) | 3368594..3368827 | + | 234 | WP_000902034.1 | DUF905 family protein | - |
| KQ258_RS16520 (3368928) | 3368928..3369746 | + | 819 | WP_001234628.1 | DUF932 domain-containing protein | - |
| KQ258_RS16525 (3369801) | 3369801..3370286 | + | 486 | WP_000849565.1 | antirestriction protein | - |
| KQ258_RS16530 (3370302) | 3370302..3370778 | + | 477 | WP_001186726.1 | RadC family protein | - |
| KQ258_RS16535 (3370841) | 3370841..3371062 | + | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| KQ258_RS16540 (3371081) | 3371081..3371725 | + | 645 | WP_000094916.1 | hypothetical protein | - |
| KQ258_RS16545 (3371775) | 3371775..3372143 | + | 369 | WP_001305076.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| KQ258_RS16550 (3372232) | 3372232..3372609 | + | 378 | WP_000854690.1 | TA system toxin CbtA family protein | Toxin |
| KQ258_RS16555 (3372606) | 3372606..3373094 | + | 489 | WP_000761699.1 | DUF5983 family protein | - |
| KQ258_RS16560 (3373111) | 3373111..3373308 | + | 198 | WP_000839293.1 | DUF957 domain-containing protein | - |
| KQ258_RS16565 (3373393) | 3373393..3374238 | + | 846 | WP_001529401.1 | DUF4942 domain-containing protein | - |
| KQ258_RS16570 (3374307) | 3374307..3374702 | + | 396 | WP_000208382.1 | DUF6088 family protein | - |
| KQ258_RS16575 (3374695) | 3374695..3375628 | + | 934 | Protein_3269 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| KQ258_RS16580 (3376045) | 3376045..3376215 | + | 171 | Protein_3270 | IS110 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | kpsF / kpsE / kpsD / kpsU / kpsC / kpsS / ugd / kpsT | 3330028..3393734 | 63706 | |
| - | flank | IS/Tn | - | - | 3376060..3376215 | 155 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14057.04 Da Isoelectric Point: 9.1510
>T206225 WP_000854690.1 NZ_CP076687:3372232-3372609 [Escherichia coli]
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
Download Length: 378 bp
>T206225 NZ_CP102244:c637834-637370 [Escherichia coli O7:H15]
ATGGATTTTCCACAAAGGGTTAATAGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAGACAGAAGAACCCCATTGA
ATGGATTTTCCACAAAGGGTTAATAGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAGACAGAAGAACCCCATTGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13560.39 Da Isoelectric Point: 4.7830
>AT206225 WP_001305076.1 NZ_CP076687:3371775-3372143 [Escherichia coli]
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
Download Length: 369 bp
>AT206225 NZ_CP102244:c638169-637834 [Escherichia coli O7:H15]
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|