Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2126262..2126533 | Replicon | chromosome |
| Accession | NZ_CP076654 | ||
| Organism | Escherichia coli strain NC19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2126392..2126495 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2126262..2126533 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPE96_RS10210 | 2122817..2123479 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KPE96_RS10215 | 2123503..2124159 | - | 657 | WP_216696500.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KPE96_RS10220 | 2124261..2124491 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KPE96_RS10225 | 2124630..2125004 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KPE96_RS10230 | 2125008..2125880 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KPE96_RS10235 | 2125893..2126234 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2126262..2126533 | - | 272 | - | - | Antitoxin |
| - | 2126392..2126495 | + | 104 | - | - | Toxin |
| KPE96_RS10240 | 2126630..2127286 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KPE96_RS10245 | 2127287..2127478 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KPE96_RS10250 | 2127583..2127819 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KPE96_RS10255 | 2127937..2129376 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206146 NZ_CP076654:2126392-2126495 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT206146 NZ_CP076654:c2126533-2126262 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
