Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3772141..3772281 | Replicon | chromosome |
| Accession | NZ_CP076651 | ||
| Organism | Serratia ureilytica strain S24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3772185..3772281 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3772141..3772281 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQJ82_RS17860 (KQJ82_17860) | 3767361..3767786 | + | 426 | WP_033642714.1 | RNA polymerase-binding protein DksA | - |
| KQJ82_RS17865 (KQJ82_17865) | 3767964..3768917 | + | 954 | WP_033644252.1 | prolyl aminopeptidase | - |
| KQJ82_RS17870 (KQJ82_17870) | 3768949..3769179 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| KQJ82_RS17875 (KQJ82_17875) | 3769520..3770038 | + | 519 | WP_033642716.1 | non-heme ferritin | - |
| KQJ82_RS17880 (KQJ82_17880) | 3770332..3770748 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| KQJ82_RS17885 (KQJ82_17885) | 3770751..3771632 | + | 882 | WP_033642717.1 | copper homeostasis membrane protein CopD | - |
| KQJ82_RS17890 (KQJ82_17890) | 3771702..3772043 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 3772141..3772281 | - | 141 | - | - | Antitoxin |
| - | 3772185..3772281 | + | 97 | - | - | Toxin |
| KQJ82_RS17895 (KQJ82_17895) | 3772534..3772938 | + | 405 | WP_089194607.1 | hypothetical protein | - |
| KQJ82_RS17900 (KQJ82_17900) | 3772935..3773153 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| KQJ82_RS17905 (KQJ82_17905) | 3773228..3773572 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| KQJ82_RS17910 (KQJ82_17910) | 3773821..3774171 | + | 351 | WP_033642720.1 | DUF4377 domain-containing protein | - |
| KQJ82_RS17915 (KQJ82_17915) | 3774343..3775299 | - | 957 | WP_180995554.1 | DUF4225 domain-containing protein | - |
| KQJ82_RS17920 (KQJ82_17920) | 3775576..3776775 | + | 1200 | WP_033642722.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T206124 NZ_CP076651:3772185-3772281 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT206124 NZ_CP076651:c3772281-3772141 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
