Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094456..2094727 | Replicon | chromosome |
| Accession | NZ_CP076646 | ||
| Organism | Escherichia coli strain GD33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094586..2094689 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094456..2094727 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP013_RS10000 | 2091011..2091673 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| KP013_RS10005 | 2091697..2092353 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KP013_RS10010 | 2092455..2092685 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KP013_RS10015 | 2092824..2093198 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KP013_RS10020 | 2093202..2094074 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KP013_RS10025 | 2094087..2094428 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2094456..2094727 | - | 272 | - | - | Antitoxin |
| - | 2094586..2094689 | + | 104 | - | - | Toxin |
| KP013_RS10030 | 2094824..2095480 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| KP013_RS10035 | 2095481..2095672 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KP013_RS10040 | 2095777..2096013 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KP013_RS10045 | 2096131..2097570 | - | 1440 | WP_077252964.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206094 NZ_CP076646:2094586-2094689 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT206094 NZ_CP076646:c2094727-2094456 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
