Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020913..2021079 | Replicon | chromosome |
| Accession | NZ_CP076605 | ||
| Organism | Raoultella ornithinolytica strain XF201 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020971..2021074 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020913..2021079 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP007_RS09570 (KP007_09570) | 2016050..2018110 | + | 2061 | WP_044350916.1 | oligopeptidase B | - |
| KP007_RS09575 (KP007_09575) | 2018116..2018775 | - | 660 | WP_152308747.1 | exodeoxyribonuclease X | - |
| KP007_RS09580 (KP007_09580) | 2018854..2019084 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| KP007_RS09585 (KP007_09585) | 2019211..2019585 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| KP007_RS09590 (KP007_09590) | 2019589..2020458 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| KP007_RS09595 (KP007_09595) | 2020475..2020813 | + | 339 | WP_044350914.1 | YebY family protein | - |
| - | 2020913..2021079 | - | 167 | - | - | Antitoxin |
| - | 2020971..2021074 | + | 104 | - | - | Toxin |
| KP007_RS09600 (KP007_09600) | 2021393..2021536 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| KP007_RS09605 (KP007_09605) | 2021657..2022619 | - | 963 | WP_193313420.1 | VirK/YbjX family protein | - |
| KP007_RS09610 (KP007_09610) | 2022762..2023406 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| KP007_RS09615 (KP007_09615) | 2023412..2023603 | - | 192 | WP_004863962.1 | YebW family protein | - |
| KP007_RS09620 (KP007_09620) | 2023697..2023936 | - | 240 | WP_004863958.1 | YebV family protein | - |
| KP007_RS09625 (KP007_09625) | 2024051..2025484 | - | 1434 | WP_072046549.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T206038 NZ_CP076605:2020971-2021074 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT206038 NZ_CP076605:c2021079-2020913 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
