Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 296330..296601 | Replicon | chromosome |
| Accession | NZ_CP076527 | ||
| Organism | Escherichia coli strain L3452210II | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 296460..296563 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 296330..296601 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPE21_RS01350 | 292885..293547 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KPE21_RS01355 | 293571..294227 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KPE21_RS01360 | 294329..294559 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KPE21_RS01365 | 294698..295072 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KPE21_RS01370 | 295076..295948 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KPE21_RS01375 | 295961..296302 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 296330..296601 | - | 272 | - | - | Antitoxin |
| - | 296460..296563 | + | 104 | - | - | Toxin |
| KPE21_RS01380 | 296698..297354 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KPE21_RS01385 | 297355..297546 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KPE21_RS01390 | 297651..297887 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KPE21_RS01395 | 298005..299444 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205912 NZ_CP076527:296460-296563 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205912 NZ_CP076527:c296601-296330 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
