Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3820311..3820582 | Replicon | chromosome |
| Accession | NZ_CP076470 | ||
| Organism | Escherichia coli strain DH5a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3820441..3820544 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3820311..3820582 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KN807_RS18335 | 3816866..3817528 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KN807_RS18340 | 3817552..3818208 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KN807_RS18345 | 3818310..3818540 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KN807_RS18350 | 3818679..3819053 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KN807_RS18355 | 3819057..3819929 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KN807_RS18360 | 3819942..3820283 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3820311..3820582 | - | 272 | - | - | Antitoxin |
| - | 3820441..3820544 | + | 104 | - | - | Toxin |
| KN807_RS18365 | 3820679..3821335 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KN807_RS18370 | 3821336..3821527 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KN807_RS18375 | 3821632..3821868 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KN807_RS18380 | 3821986..3823425 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205738 NZ_CP076470:3820441-3820544 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205738 NZ_CP076470:c3820582-3820311 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
