Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1881002..1881273 | Replicon | chromosome |
| Accession | NZ_CP076404 | ||
| Organism | Escherichia coli strain K-12 substr. AB1157 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1881040..1881143 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1881002..1881273 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJY95_RS09225 | 1878159..1879598 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KJY95_RS09230 | 1879716..1879952 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KJY95_RS09235 | 1880057..1880248 | + | 192 | WP_000457842.1 | YebW family protein | - |
| KJY95_RS09240 | 1880249..1880905 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1881002..1881273 | + | 272 | - | - | Antitoxin |
| - | 1881040..1881143 | - | 104 | - | - | Toxin |
| KJY95_RS09245 | 1881301..1881642 | - | 342 | WP_000976476.1 | YebY family protein | - |
| KJY95_RS09250 | 1881655..1882527 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KJY95_RS09255 | 1882531..1882905 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KJY95_RS09260 | 1883044..1883274 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KJY95_RS09265 | 1883376..1884032 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KJY95_RS09270 | 1884056..1884718 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205630 NZ_CP076404:c1881143-1881040 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205630 NZ_CP076404:1881002-1881273 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
