Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2593108..2593376 | Replicon | chromosome |
| Accession | NZ_CP076344 | ||
| Organism | Escherichia coli strain AVS0096 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2593146..2593248 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2593108..2593376 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM937_RS12700 | 2590264..2591703 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KM937_RS12705 | 2591822..2592058 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KM937_RS12710 | 2592163..2592354 | + | 192 | WP_024186842.1 | YebW family protein | - |
| KM937_RS12715 | 2592355..2593011 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2593108..2593376 | + | 269 | - | - | Antitoxin |
| - | 2593146..2593248 | - | 103 | - | - | Toxin |
| KM937_RS12720 | 2593406..2593747 | - | 342 | WP_000984819.1 | YebY family protein | - |
| KM937_RS12725 | 2593760..2594632 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| KM937_RS12730 | 2594636..2595010 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KM937_RS12735 | 2595149..2595379 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KM937_RS12740 | 2595481..2596137 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KM937_RS12745 | 2596161..2596823 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T205526 NZ_CP076344:c2593248-2593146 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT205526 NZ_CP076344:2593108-2593376 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
