Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 312146..312417 | Replicon | chromosome |
| Accession | NZ_CP076301 | ||
| Organism | Escherichia coli strain Survcare321 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 312276..312379 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 312146..312417 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KNN06_RS01535 | 308701..309363 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KNN06_RS01540 | 309387..310043 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KNN06_RS01545 | 310145..310375 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KNN06_RS01550 | 310514..310888 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| KNN06_RS01555 | 310892..311764 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| KNN06_RS01560 | 311777..312118 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 312146..312417 | - | 272 | - | - | Antitoxin |
| - | 312276..312379 | + | 104 | - | - | Toxin |
| KNN06_RS01565 | 312514..313170 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| KNN06_RS01570 | 313171..313362 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KNN06_RS01575 | 313467..313703 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KNN06_RS01580 | 313821..315260 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205408 NZ_CP076301:312276-312379 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205408 NZ_CP076301:c312417-312146 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
