Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911670..1911941 | Replicon | chromosome |
| Accession | NZ_CP076285 | ||
| Organism | Escherichia coli strain 41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911708..1911811 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911670..1911941 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A12_RS09245 | 1908827..1910266 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A12_RS09250 | 1910384..1910620 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A12_RS09255 | 1910725..1910916 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A12_RS09260 | 1910917..1911573 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1911670..1911941 | + | 272 | - | - | Antitoxin |
| - | 1911708..1911811 | - | 104 | - | - | Toxin |
| A7A12_RS09265 | 1911969..1912310 | - | 342 | WP_000976492.1 | YebY family protein | - |
| A7A12_RS09270 | 1912323..1913195 | - | 873 | WP_000879273.1 | copper homeostasis membrane protein CopD | - |
| A7A12_RS09275 | 1913199..1913573 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A7A12_RS09280 | 1913712..1913942 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A12_RS09285 | 1914044..1914700 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A12_RS09290 | 1914724..1915386 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205378 NZ_CP076285:c1911811-1911708 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205378 NZ_CP076285:1911670-1911941 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
