Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056565..2056836 | Replicon | chromosome |
| Accession | NZ_CP076282 | ||
| Organism | Escherichia coli strain 442/2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056603..2056706 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056565..2056836 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A15_RS10085 | 2053722..2055161 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A15_RS10090 | 2055279..2055515 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A15_RS10095 | 2055620..2055811 | + | 192 | WP_000457842.1 | YebW family protein | - |
| A7A15_RS10100 | 2055812..2056468 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2056565..2056836 | + | 272 | - | - | Antitoxin |
| - | 2056603..2056706 | - | 104 | - | - | Toxin |
| A7A15_RS10105 | 2056864..2057205 | - | 342 | WP_000976492.1 | YebY family protein | - |
| A7A15_RS10110 | 2057218..2058090 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A15_RS10115 | 2058094..2058468 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A7A15_RS10120 | 2058607..2058837 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A15_RS10125 | 2058939..2059595 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A15_RS10130 | 2059619..2060281 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205343 NZ_CP076282:c2056706-2056603 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205343 NZ_CP076282:2056565-2056836 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
