205247

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 4908704..4909299 Replicon chromosome
Accession NZ_CP076274
Organism Escherichia coli strain P393-F10

Toxin (Protein)


Gene name chpB Uniprot ID U9Y4M4
Locus tag A7A10_RS24125 Protein ID WP_000239579.1
Coordinates 4908949..4909299 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID U9Y2K1
Locus tag A7A10_RS24120 Protein ID WP_001223208.1
Coordinates 4908704..4908955 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A7A10_RS24110 (4904368) 4904368..4908147 + 3780 WP_000060901.1 autotransporter assembly complex protein TamB -
A7A10_RS24115 (4908150) 4908150..4908491 + 342 WP_001219160.1 gamma-glutamylcyclotransferase -
A7A10_RS24120 (4908704) 4908704..4908955 + 252 WP_001223208.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
A7A10_RS24125 (4908949) 4908949..4909299 + 351 WP_000239579.1 endoribonuclease toxin ChpB Toxin
A7A10_RS24130 (4909379) 4909379..4909909 - 531 WP_000055072.1 inorganic diphosphatase -
A7A10_RS24135 (4910219) 4910219..4911175 + 957 WP_000265933.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
A7A10_RS24140 (4911485) 4911485..4912987 + 1503 WP_000205793.1 sugar ABC transporter ATP-binding protein -
A7A10_RS24145 (4913001) 4913001..4914023 + 1023 WP_001317446.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

SpoVT-AbrB domain

(6-49)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12511.45 Da        Isoelectric Point: 5.6219

>T205247 WP_000239579.1 NZ_CP076274:4908949-4909299 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLRARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

>T205247 NZ_CP101525:73509-73847 [Burkholderia arboris]
ATGGTTGACATACTGCAATCGGTGCCCTACAGTGCGCCTACGTTCAGCGTCCGGACCACCGCCGTCTTCGACGCCTGGTT
TGCCGGCCTGTCCGATCGCATCGCCAGGCGCCGCATCCAGGCGCGCATCGACCGCCTCTCGATGGGCAATCCGGGCGACT
GGAAATCCGCCGGCTCGCCCATCGTCGAAATGCGCATCGATCACGGGCCCGGCTATCGCGTCTACTACGTCCGGCGTGGA
ATGCGCTGGGTGATCCTGCTCTGCGGCGGCGATAAATCAACGCAACAGGCCGATATCCGCGCCGCACACGCGATGCTTGC
GCACCTCGACATGGAGTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>AT205247 WP_001223208.1 NZ_CP076274:4908704-4908955 [Escherichia coli]
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp

>AT205247 NZ_CP101525:73851-74150 [Burkholderia arboris]
ATGGACAAGATCAAGACCCGGCCGTGGGATTCGGCCGAACACCTGAAAACCGCAGACGACATGGCCGACTACTTCGACGC
GTGCCTGCAGGAGGCCGGCGACGATCCGGCCTTCATCGCGCACGCGCTCGGTGTGATCGCCCGCGCACGCGGCATGTCGC
AGGTCGCGCGCGATGCGGGGCTGTCGCGCGAAGGGCTGTACAAGGCGCTGTCGCACGACGGCAACCCGAGCTTCGGCACG
ATCCTGAAGGTCATCAAGGCGCTCGGCCTGCAGTTGCACGGCTCGAAAGCGCACGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y8A8

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LQ26

References