Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052579..2052850 | Replicon | chromosome |
| Accession | NZ_CP076268 | ||
| Organism | Escherichia coli strain D217-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2052617..2052720 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052579..2052850 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A16_RS09990 | 2049736..2051175 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A16_RS09995 | 2051293..2051529 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A16_RS10000 | 2051634..2051825 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A16_RS10005 | 2051826..2052482 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2052579..2052850 | + | 272 | - | - | Antitoxin |
| - | 2052617..2052720 | - | 104 | - | - | Toxin |
| A7A16_RS10010 | 2052878..2053219 | - | 342 | WP_000976492.1 | YebY family protein | - |
| A7A16_RS10015 | 2053232..2054104 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| A7A16_RS10020 | 2054108..2054482 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A7A16_RS10025 | 2054621..2054851 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A16_RS10030 | 2054953..2055609 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A16_RS10035 | 2055633..2056295 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205132 NZ_CP076268:c2052720-2052617 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205132 NZ_CP076268:2052579-2052850 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
