Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2073614..2073885 | Replicon | chromosome |
| Accession | NZ_CP076259 | ||
| Organism | Escherichia coli strain WY517-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2073652..2073755 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2073614..2073885 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A20_RS10100 | 2070771..2072210 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A20_RS10105 | 2072328..2072564 | + | 237 | WP_001295499.1 | YebV family protein | - |
| A7A20_RS10110 | 2072669..2072860 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A20_RS10115 | 2072861..2073517 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2073614..2073885 | + | 272 | - | - | Antitoxin |
| - | 2073652..2073755 | - | 104 | - | - | Toxin |
| A7A20_RS10120 | 2073913..2074254 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A7A20_RS10125 | 2074267..2075139 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| A7A20_RS10130 | 2075143..2075517 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A7A20_RS10135 | 2075656..2075886 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A20_RS10140 | 2075988..2076644 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| A7A20_RS10145 | 2076668..2077330 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T205030 NZ_CP076259:c2073755-2073652 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT205030 NZ_CP076259:2073614-2073885 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
