Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 2234814..2235478 Replicon chromosome
Accession NC_002944
Organism Mycobacterium avium subsp. paratuberculosis K-10

Toxin (Protein)


Gene name vapC Uniprot ID Q73YC9
Locus tag MAP_RS10300 Protein ID WP_003872398.1
Coordinates 2234814..2235221 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID Q73YC8
Locus tag MAP_RS10305 Protein ID WP_003872399.1
Coordinates 2235218..2235478 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MAP_RS10280 2230014..2231183 + 1170 WP_003878212.1 hypothetical protein -
MAP_RS10285 2231172..2231702 - 531 WP_003878213.1 TetR/AcrR family transcriptional regulator -
MAP_RS10290 2231823..2232368 - 546 WP_003878214.1 carboxymuconolactone decarboxylase family protein -
MAP_RS10295 2232365..2232886 - 522 WP_003878215.1 carboxymuconolactone decarboxylase family protein -
MAP_RS22690 2233123..2234667 + 1545 WP_010949452.1 serine/threonine protein kinase -
MAP_RS10300 2234814..2235221 - 408 WP_003872398.1 type II toxin-antitoxin system VapC family toxin Toxin
MAP_RS10305 2235218..2235478 - 261 WP_003872399.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
MAP_RS10310 2235659..2236111 - 453 WP_003872400.1 VOC family protein -
MAP_RS10315 2236277..2237545 + 1269 WP_003872401.1 cytochrome P450 -
MAP_RS10320 2237747..2239204 - 1458 WP_003878220.1 serine/threonine protein kinase -
MAP_RS10325 2239400..2240062 - 663 WP_003872403.1 TetR/AcrR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-125)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-64)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14418.47 Da        Isoelectric Point: 4.5642

>T20500 WP_003872398.1 NC_002944:c2235221-2234814 [Mycobacterium avium subsp. paratuberculosis K-10]
MTARPAAGVLDTSVFIASESGRQLDEARIPDEVATTVVTLAELHAGVLAATTSNVRAQRLATLESIADMEMLPVDDDAVR
MWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAALDGAANLAIIRV

Download         Length: 408 bp

>T20500 NC_002944:c2235221-2234814 [Mycobacterium avium subsp. paratuberculosis K-10]
ATGACTGCAAGGCCGGCGGCCGGGGTGCTCGACACCTCGGTGTTCATCGCGTCCGAAAGCGGACGGCAGCTGGACGAGGC
GCGTATCCCCGACGAGGTAGCCACCACCGTCGTCACCCTTGCCGAACTTCACGCCGGCGTATTAGCCGCGACGACGTCCA
ACGTTCGGGCGCAACGCCTCGCAACGCTGGAATCGATAGCGGATATGGAAATGCTGCCAGTCGACGACGACGCGGTCCGC
ATGTGGGCAAGGTTGCGGATCCACCTAGCCGAGGCTGGACGGCGGATGCGGGCTAATGATCTGTGGATCGCGGCGATCGC
GGCATCGCGGGGACTGCCCGTTGTCACCCAGGATGACGACTTCGCCGCACTCGACGGCGCGGCGAACCTGGCGATTATTC
GGGTTTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9635.01 Da        Isoelectric Point: 11.7137

>AT20500 WP_003872399.1 NC_002944:c2235478-2235218 [Mycobacterium avium subsp. paratuberculosis K-10]
MSEVASRELRNDTAGVLRRVREGEDVTITINGRAVAMLTPLRPQRRRWLSKAELLSRLRRAQADPGLRQDLATLAGDTTE
DLGPIR

Download         Length: 261 bp

>AT20500 NC_002944:c2235478-2235218 [Mycobacterium avium subsp. paratuberculosis K-10]
ATGTCTGAAGTGGCGTCTCGCGAGCTGCGCAACGATACGGCGGGGGTACTGCGGCGCGTACGGGAAGGGGAGGACGTCAC
CATCACCATCAACGGCCGAGCCGTCGCGATGCTGACCCCGCTGCGGCCGCAGCGACGGCGGTGGCTGAGCAAGGCGGAGT
TGCTGTCGCGCTTGCGCCGCGCGCAAGCCGATCCCGGGCTACGCCAAGACCTCGCAACCCTTGCAGGCGACACCACTGAG
GACCTCGGTCCGATCCGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7L5MIC8

Antitoxin

Source ID Structure
AlphaFold DB A0A7L5MIC5

References