Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 1068731..1069236 | Replicon | chromosome |
Accession | NZ_CP076249 | ||
Organism | Xanthomonas translucens pv. hordei strain UPB458 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | KFS86_RS04890 | Protein ID | WP_058195736.1 |
Coordinates | 1068731..1068988 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | relE | Uniprot ID | A0A1C3TRJ9 |
Locus tag | KFS86_RS04895 | Protein ID | WP_003468816.1 |
Coordinates | 1068985..1069236 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KFS86_RS04860 (KFS86_04835) | 1063965..1065314 | + | 1350 | WP_058360629.1 | aminodeoxychorismate synthase component I | - |
KFS86_RS04865 (KFS86_04840) | 1065390..1066451 | + | 1062 | WP_058360633.1 | endolytic transglycosylase MltG | - |
KFS86_RS04870 (KFS86_04845) | 1066448..1067116 | + | 669 | WP_003479795.1 | dTMP kinase | - |
KFS86_RS04875 (KFS86_04850) | 1067113..1068090 | + | 978 | WP_003479796.1 | DNA polymerase III subunit delta' | - |
KFS86_RS04880 (KFS86_04855) | 1068087..1068440 | + | 354 | WP_003479797.1 | PilZ domain-containing protein | - |
KFS86_RS04890 (KFS86_04865) | 1068731..1068988 | - | 258 | WP_058195736.1 | Txe/YoeB family addiction module toxin | Toxin |
KFS86_RS04895 (KFS86_04870) | 1068985..1069236 | - | 252 | WP_003468816.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
KFS86_RS04900 (KFS86_04875) | 1069345..1069878 | + | 534 | Protein_953 | endonuclease | - |
KFS86_RS04905 (KFS86_04880) | 1069875..1070597 | - | 723 | WP_058360631.1 | helix-turn-helix transcriptional regulator | - |
KFS86_RS04910 (KFS86_04885) | 1070721..1071164 | + | 444 | WP_058360632.1 | nuclear transport factor 2 family protein | - |
KFS86_RS04915 | 1071334..1071483 | + | 150 | WP_230939940.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
KFS86_RS04920 (KFS86_04895) | 1071603..1071785 | + | 183 | WP_196480047.1 | hypothetical protein | - |
KFS86_RS20235 | 1072624..1072755 | + | 132 | WP_269113130.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 1071760..1072158 | 398 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 10216.73 Da Isoelectric Point: 9.7381
>T204991 WP_058195736.1 NZ_CP076249:c1068988-1068731 [Xanthomonas translucens pv. hordei]
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGMLLIAQV
RYHYV
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGMLLIAQV
RYHYV
Download Length: 258 bp
>T204991 NZ_CP101310:2921520-2921627 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9281.56 Da Isoelectric Point: 5.1186
>AT204991 WP_003468816.1 NZ_CP076249:c1069236-1068985 [Xanthomonas translucens pv. hordei]
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
Download Length: 252 bp
>AT204991 NZ_CP101310:c2921467-2921406 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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