Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2338763..2339034 | Replicon | chromosome |
| Accession | NZ_CP076243 | ||
| Organism | Escherichia coli O157:H7 strain Balcarce_14.2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2338893..2338996 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2338763..2339034 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKN69_RS11960 | 2335318..2335980 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| JKN69_RS11965 | 2336004..2336660 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JKN69_RS11970 | 2336762..2336992 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JKN69_RS11975 | 2337131..2337505 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| JKN69_RS11980 | 2337509..2338381 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| JKN69_RS11985 | 2338394..2338735 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2338763..2339034 | - | 272 | - | - | Antitoxin |
| - | 2338893..2338996 | + | 104 | - | - | Toxin |
| JKN69_RS11990 | 2339131..2339787 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| JKN69_RS11995 | 2339788..2339979 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JKN69_RS12000 | 2340084..2340320 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JKN69_RS12005 | 2340438..2341877 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204936 NZ_CP076243:2338893-2338996 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204936 NZ_CP076243:c2339034-2338763 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
