Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3568081..3568352 | Replicon | chromosome |
| Accession | NZ_CP076232 | ||
| Organism | Escherichia coli O157:H7 strain 7.1_Anguil | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3568211..3568314 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3568081..3568352 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XE90_RS18020 | 3564636..3565298 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| XE90_RS18025 | 3565322..3565978 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| XE90_RS18030 | 3566080..3566310 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| XE90_RS18035 | 3566449..3566823 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| XE90_RS18040 | 3566827..3567699 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| XE90_RS18045 | 3567712..3568053 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 3568081..3568352 | - | 272 | - | - | Antitoxin |
| - | 3568211..3568314 | + | 104 | - | - | Toxin |
| XE90_RS18050 | 3568449..3569105 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| XE90_RS18055 | 3569106..3569297 | - | 192 | WP_001296140.1 | YebW family protein | - |
| XE90_RS18060 | 3569402..3569638 | - | 237 | WP_001295499.1 | YebV family protein | - |
| XE90_RS18065 | 3569756..3571195 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204811 NZ_CP076232:3568211-3568314 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204811 NZ_CP076232:c3568352-3568081 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
