Detailed information of TA system TA020455

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 3064893..3065572
• Replicon: chromosome
• Accession: NC_002755
• Organism: Mycobacterium tuberculosis CDC1551

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WF90
• Locus tag: MT_RS14470
• Protein ID: WP_003414059.1
• Coordinates: 3064893..3065309 (-)
• Length: 139 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TF64
• Locus tag: MT_RS14475
• Protein ID: WP_003414061.1
• Coordinates: 3065306..3065572 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MT_RS14450	3060945..3061847	-	903	WP_003900564.1	4-hydroxy-tetrahydrodipicolinate synthase	-
MT_RS14455	3061916..3062668	-	753	WP_003899465.1	FAD-dependent thymidylate synthase	-
MT_RS14460	3062912..3063187	-	276	WP_003414055.1	type I restriction endonuclease subunit S	-
MT_RS14465	3063184..3064806	-	1623	WP_003414057.1	type I restriction-modification system subunit M	-
MT_RS14470	3064893..3065309	-	417	WP_003414059.1	type II toxin-antitoxin system toxin ribonuclease C21	Toxin
MT_RS14475	3065306..3065572	-	267	WP_003414061.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
MT_RS14480	3065598..3065993	-	396	WP_003414064.1	type II toxin-antitoxin system VapC family toxin	-
MT_RS14485	3065990..3066259	-	270	WP_003414066.1	type II toxin-antitoxin system VapB family antitoxin	-
MT_RS14490	3066269..3067363	-	1095	WP_003414068.1	restriction endonuclease subunit S	-
MT_RS14495	3067360..3067779	-	420	WP_003414070.1	winged helix-turn-helix domain-containing protein	-
MT_RS14500	3067853..3068332	-	480	WP_003414073.1	dihydrofolate reductase	-
MT_RS14505	3068403..3069203	-	801	WP_003911953.1	thymidylate synthase	-
MT_RS14510	3069359..3070096	+	738	WP_003414079.1	dienelactone hydrolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-123)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (16-56)

Sequences

Toxin

Protein

• Length: 139 a.a.
• Molecular weight: 15773.00 Da
• Isoelectric Point: 7.1294

>T20455 WP_003414059.1 NC_002755:c3065309-3064893 [Mycobacterium tuberculosis CDC1551]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Nucleotide

• Length: 417 bp

>T20455 NC_002755:c3065309-3064893 [Mycobacterium tuberculosis CDC1551]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9493.77 Da
• Isoelectric Point: 7.2783

>AT20455 WP_003414061.1 NC_002755:c3065572-3065306 [Mycobacterium tuberculosis CDC1551]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Nucleotide

• Length: 267 bp

>AT20455 NC_002755:c3065572-3065306 [Mycobacterium tuberculosis CDC1551]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Structures

Toxin

• PDB: 5SV2

Antitoxin

• AlphaFold DB: G0TF64