Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3470265..3470412 | Replicon | chromosome |
| Accession | NZ_CP075885 | ||
| Organism | Klebsiella quasipneumoniae strain JNQH473 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3470306..3470408 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3470265..3470412 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KLH66_RS17960 | 3465400..3467460 | + | 2061 | WP_048297811.1 | oligopeptidase B | - |
| KLH66_RS17965 | 3467464..3468123 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| KLH66_RS17970 | 3468202..3468432 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KLH66_RS17975 | 3468545..3468919 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| KLH66_RS17980 | 3468923..3469792 | + | 870 | WP_177335450.1 | copper homeostasis membrane protein CopD | - |
| KLH66_RS17985 | 3469809..3470147 | + | 339 | WP_072413393.1 | YebY family protein | - |
| - | 3470265..3470412 | - | 148 | - | - | Antitoxin |
| - | 3470306..3470408 | + | 103 | - | - | Toxin |
| KLH66_RS17990 | 3470787..3470930 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| KLH66_RS17995 | 3471031..3471999 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| KLH66_RS18000 | 3472156..3472809 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| KLH66_RS18005 | 3472806..3472997 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KLH66_RS18010 | 3473095..3473334 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KLH66_RS18015 | 3473450..3474880 | - | 1431 | WP_087824136.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T204461 NZ_CP075885:3470306-3470408 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT204461 NZ_CP075885:c3470412-3470265 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
