Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3293906..3294071 | Replicon | chromosome |
| Accession | NZ_CP075881 | ||
| Organism | Klebsiella michiganensis strain JNQH491 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3293964..3294067 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3293906..3294071 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KLH67_RS15470 (KLH67_15470) | 3289033..3291093 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| KLH67_RS15475 (KLH67_15475) | 3291100..3291759 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| KLH67_RS15480 (KLH67_15480) | 3291838..3292068 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| KLH67_RS15485 (KLH67_15485) | 3292204..3292578 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| KLH67_RS15490 (KLH67_15490) | 3292583..3293452 | + | 870 | WP_049082451.1 | copper homeostasis membrane protein CopD | - |
| KLH67_RS15495 (KLH67_15495) | 3293469..3293807 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 3293906..3294071 | - | 166 | - | - | Antitoxin |
| - | 3293964..3294067 | + | 104 | - | - | Toxin |
| KLH67_RS15500 (KLH67_15500) | 3294145..3295230 | - | 1086 | WP_154904340.1 | tyrosine-type recombinase/integrase | - |
| KLH67_RS15505 (KLH67_15505) | 3295199..3295471 | - | 273 | WP_131050309.1 | excisionase | - |
| KLH67_RS15510 (KLH67_15510) | 3295555..3296184 | - | 630 | WP_154904341.1 | Eac protein | - |
| KLH67_RS15515 (KLH67_15515) | 3296242..3296598 | - | 357 | WP_154904342.1 | DUF2591 family protein | - |
| KLH67_RS15520 (KLH67_15520) | 3296873..3297094 | - | 222 | WP_154904343.1 | TraR/DksA family transcriptional regulator | - |
| KLH67_RS15525 (KLH67_15525) | 3297091..3297363 | - | 273 | WP_154904344.1 | hypothetical protein | - |
| KLH67_RS15530 (KLH67_15530) | 3297383..3297676 | - | 294 | WP_154904345.1 | sigma-70 family RNA polymerase sigma factor | - |
| KLH67_RS15535 (KLH67_15535) | 3297673..3298269 | - | 597 | WP_154904346.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3267828..3367516 | 99688 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204444 NZ_CP075881:3293964-3294067 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 166 bp
>AT204444 NZ_CP075881:c3294071-3293906 [Klebsiella michiganensis]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGAC
GAATAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTGGAC
GAATAA
