Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4843969..4844240 | Replicon | chromosome |
| Accession | NZ_CP075852 | ||
| Organism | Escherichia coli strain S19-651 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4844099..4844202 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4843969..4844240 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY28_RS23540 | 4840523..4841185 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFY28_RS23545 | 4841209..4841865 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFY28_RS23550 | 4841967..4842197 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFY28_RS23555 | 4842336..4842710 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFY28_RS23560 | 4842714..4843586 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JFY28_RS23565 | 4843615..4843941 | + | 327 | WP_032339652.1 | YebY family protein | - |
| - | 4843969..4844240 | - | 272 | - | - | Antitoxin |
| - | 4844099..4844202 | + | 104 | - | - | Toxin |
| JFY28_RS23570 | 4844337..4844993 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFY28_RS23575 | 4844994..4845185 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFY28_RS23580 | 4845290..4845526 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFY28_RS23585 | 4845644..4847083 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204420 NZ_CP075852:4844099-4844202 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204420 NZ_CP075852:c4844240-4843969 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
