Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 977157..977428 | Replicon | chromosome |
| Accession | NZ_CP075737 | ||
| Organism | Escherichia coli strain CPF6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 977195..977298 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 977157..977428 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKZ13_RS04750 | 974314..975753 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KKZ13_RS04755 | 975871..976107 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KKZ13_RS04760 | 976212..976403 | + | 192 | WP_000457842.1 | YebW family protein | - |
| KKZ13_RS04765 | 976404..977060 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 977157..977428 | + | 272 | - | - | Antitoxin |
| - | 977195..977298 | - | 104 | - | - | Toxin |
| KKZ13_RS04770 | 977456..977797 | - | 342 | WP_000976476.1 | YebY family protein | - |
| KKZ13_RS04775 | 977810..978682 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KKZ13_RS04780 | 978686..979060 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KKZ13_RS04785 | 979199..979429 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KKZ13_RS04790 | 979531..980187 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KKZ13_RS04795 | 980211..980873 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204372 NZ_CP075737:c977298-977195 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204372 NZ_CP075737:977157-977428 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
