Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 33245..33780 Replicon plasmid pCP52E-IncFIB
Accession NZ_CP075732
Organism Escherichia coli strain CP52E

Toxin (Protein)


Gene name relE Uniprot ID Q3YTD6
Locus tag KKZ11_RS23315 Protein ID WP_000222766.1
Coordinates 33245..33532 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID V0VIP2
Locus tag KKZ11_RS23320 Protein ID WP_001132900.1
Coordinates 33529..33780 (-) Length 84 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KKZ11_RS23295 (28688) 28688..29245 - 558 WP_001235713.1 recombinase family protein -
KKZ11_RS23300 (29409) 29409..32414 + 3006 WP_001143760.1 Tn3-like element Tn3 family transposase -
KKZ11_RS23305 (32448) 32448..32948 + 501 Protein_24 Tn3 family transposase -
KKZ11_RS23310 (32982) 32982..33170 + 189 Protein_25 IS3 family transposase -
KKZ11_RS23315 (33245) 33245..33532 - 288 WP_000222766.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KKZ11_RS23320 (33529) 33529..33780 - 252 WP_001132900.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
KKZ11_RS23325 (34746) 34746..35603 - 858 WP_039002220.1 incFII family plasmid replication initiator RepA -
KKZ11_RS23330 (35596) 35596..35670 - 75 WP_061357229.1 RepA leader peptide Tap -
KKZ11_RS23335 (35902) 35902..36159 - 258 WP_001541895.1 replication regulatory protein RepA -
KKZ11_RS23340 (36427) 36427..36576 - 150 WP_001312851.1 Hok/Gef family protein -
- (36620) 36620..36681 + 62 NuclAT_1 - -
- (36620) 36620..36681 + 62 NuclAT_1 - -
- (36620) 36620..36681 + 62 NuclAT_1 - -
- (36620) 36620..36681 + 62 NuclAT_1 - -
KKZ11_RS23345 (37023) 37023..37235 - 213 WP_001541896.1 ANR family transcriptional regulator -
KKZ11_RS23350 (37370) 37370..37930 - 561 WP_000139310.1 fertility inhibition protein FinO -
KKZ11_RS23355 (37985) 37985..38728 - 744 WP_039002216.1 conjugal transfer pilus acetylase TraX -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid blaTEM-1B / dfrA14 vat 1..115794 115794


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-83)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 11147.23 Da        Isoelectric Point: 10.5832

>T204359 WP_000222766.1 NZ_CP075732:c33532-33245 [Escherichia coli]
MTYTVKFRDDALKEWLKLDKTIQQQFVKKLKKCSENPHIPSAKLRGLKDCYKIKLRASGFRLVYQVIDDMLIIAVVAVGK
RERSNVYNLASERMR

Download         Length: 288 bp

>T204359 NZ_CP100707:c4405229-4404738 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGATCTCCACCCCTGAGCCGCTTCATGCCGGACATATTCTTACTCCGTTTTGCTGCGGTGTGGATTCTATAGATAACTG
GCTGGAACAGCGGGCGATGAAAAATCAGACCACTGGCGCGTCCCGTACCTTTGTGTGTTGTGGCAGCGATTCGAACGTAC
TGGCCTATTACTCGCTGGCGTCCAGCGCGGTCACGACGAATACCTCCCCCGGTCGCTTTCGTCGCAATATGCCTGACCCG
ATTCCGGTTGTGGTATTGGGGCGTCTGGCGGTGGATAAATCGCTTCATGGGCAGGGCGTCGCTCGGGCGCTGGTACGCGA
CGCAGGGCTGCGGGTTATTCAGGTGGCGGAGACTATCGGCATTCGTGGGATGCTGGTTCACGCCCTGTCGGATGAAGCGC
GGGAATTTTATCAGCGGGTGGGGTTTGTACCGTCGCCGATGGATCCGATGATGTTGATGGTGACGTTGGGGGATTTGGTG
GAGAGTGTTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9211.41 Da        Isoelectric Point: 4.0780

>AT204359 WP_001132900.1 NZ_CP075732:c33780-33529 [Escherichia coli]
MPNIILSDTSASVSELKKNPMATVSAGDGYPVAILNRNQPAFYCVPAELYERMLDALDDQELVKLVTERSNQPLHDVDLD
SYL

Download         Length: 252 bp

>AT204359 NZ_CP100707:c4405519-4405226 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGCCAGCCGCAAACAGTATGGCGATGAAACGCGAAACCCTGAACCTGCGTATCAAACCCGCCGAGCGCGATCTTATCGA
TCGAGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAAGCTGCCCGCGCTGCCGCAGAGGAAGCGCTTA
TCGAACAACGCATCATTATGGCCGATCCAGAGGCTTATCAGGAGTTTCTCGTTCGTTTGGATCAAACACCTTCACCTAAT
GCCGCACTGCGTAAAACCATGCAGACCCCTGCGCCGTGGGAGCAGGAAAAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A829CDZ2


Antitoxin

Source ID Structure
AlphaFold DB V0VIP2

References