Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2035609..2035880 | Replicon | chromosome |
| Accession | NZ_CP075731 | ||
| Organism | Escherichia coli strain CP52E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2035739..2035842 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2035609..2035880 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKZ11_RS09690 | 2032164..2032826 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KKZ11_RS09695 | 2032850..2033506 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KKZ11_RS09700 | 2033608..2033838 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KKZ11_RS09705 | 2033977..2034351 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| KKZ11_RS09710 | 2034355..2035227 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KKZ11_RS09715 | 2035240..2035581 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2035609..2035880 | - | 272 | - | - | Antitoxin |
| - | 2035739..2035842 | + | 104 | - | - | Toxin |
| KKZ11_RS09720 | 2035977..2036634 | + | 658 | Protein_1897 | protein-serine/threonine phosphatase | - |
| KKZ11_RS09725 | 2036635..2036826 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KKZ11_RS09730 | 2036931..2037167 | - | 237 | WP_136698269.1 | YebV family protein | - |
| KKZ11_RS09735 | 2037285..2038724 | - | 1440 | WP_040062830.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204340 NZ_CP075731:2035739-2035842 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204340 NZ_CP075731:c2035880-2035609 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
