Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4869639..4869910 | Replicon | chromosome |
| Accession | NZ_CP075697 | ||
| Organism | Escherichia coli strain STEC2018-607 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4869769..4869872 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4869639..4869910 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX52_RS23855 | 4866194..4866856 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFX52_RS23860 | 4866880..4867536 | - | 657 | WP_198777196.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFX52_RS23865 | 4867638..4867868 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFX52_RS23870 | 4868007..4868381 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFX52_RS23875 | 4868385..4869257 | + | 873 | WP_062859286.1 | copper homeostasis membrane protein CopD | - |
| JFX52_RS23880 | 4869270..4869611 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4869639..4869910 | - | 272 | - | - | Antitoxin |
| - | 4869769..4869872 | + | 104 | - | - | Toxin |
| JFX52_RS23885 | 4870007..4870663 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFX52_RS23890 | 4870664..4870855 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFX52_RS23895 | 4870960..4871196 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFX52_RS23900 | 4871314..4872753 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204252 NZ_CP075697:4869769-4869872 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204252 NZ_CP075697:c4869910-4869639 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
